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SATORI

A System for Ontology-Guided Visual Exploration of Biomedical Data Repositories

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SATORI is an ontology-guided visual exploration system for data repositories, which combines powerful metadata search with a treemap and a node-link diagram that visualize the repository structure, provide context to retrieved data sets, and serve as an interface to drive semantic querying and exploration, and thereby support the information foraging loop. SATORI is web-based, open-source, and integrated in the Refinery Platform – an application for biomedical data management, analysis, and visualization.

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Usage Scenarios

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Publication

  1. SATORI: A System for Ontology-Guided Visual Exploration of Biomedical Data Repositories

    1. Fritz Lekschas
    2. Nils Gehlenborg
    Bioinformatics, btx739, 2017, doi: 10.1093/bioinformatics/btx739

Source Code

All parts of SATORI are publicly accessible and open-source.

Authors

  1. Fritz Lekschas

    Harvard John A. Paulson School of Engineering and Applied Sciences
    Department of Biomedical Informatics, Harvard Medical School

  2. Nils Gehlenborg

    Department of Biomedical Informatics, Harvard Medical School