SATORI

SATORI is an ontology-guided visual exploration system for data repositories, which combines powerful metadata search with a treemap and a node-link diagram that visualize the repository structure, provide context to retrieved data sets, and serve as an interface to drive semantic querying and exploration, and thereby support the information foraging loop. SATORI is web-based, open-source, and integrated in the Refinery Platform – an application for biomedical data management, analysis, and visualization.

Live Demo

Usage Scenarios

More Information

Publication

1. SATORI: A System for Ontology-Guided Visual Exploration of Biomedical Data Repositories

   1. Fritz Lekschas
   2. Nils Gehlenborg

   Bioinformatics, btx739, 2017, doi: 10.1093/bioinformatics/btx739

Source Code

All parts of SATORI are publicly accessible and open-source.

• https://github.com/refinery-platform/refinery-platform
• https://github.com/refinery-platform/neo4j-ontology
• https://github.com/refinery-platform/ontology-imports
• https://github.com/flekschas/d3-list-graph
• https://github.com/flekschas/owl2neo4j

Authors

1. Fritz Lekschas

   Harvard John A. Paulson School of Engineering and Applied Sciences
   Department of Biomedical Informatics, Harvard Medical School

   • http://lekschas.de
   • flekschas
   • flekschas

2. Nils Gehlenborg

   Department of Biomedical Informatics, Harvard Medical School

   • http://gehlenborglab.org
   • nils_gehlenborg
   • ngehlenborg